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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LYAM3_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.86
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGCPKGSWK PRLRSVVLGA AQLIWLSALI SELVNRKKVA TWTYNYSTKA YSWNNSRAFC  60
   61 KRHFTDLVAI QNKNEIAHLN DVIPYVNSYY WIGIRKINNK WTWVGTNKTL TAEAENWADN 120
  121 EPNNKRNNQD CVEIYIKSNS APGKWNDEPC FKRKRALCYT ASCQDMSCNS QGERIETIGS 180
  181 YTCSCYPGFY GPECEYVQEC GKFDIPQHVL MNCSHPLGDF SFSSQCTFSC PEGYDLNGPS 240
  241 EMQCLASGIW TNNPPQCKAV QCQSLEAPLH GTMDCTHPLA AFAYDSSCKF ECQPGYRMRG 300
  301 SDILHCTDSG QWSEPLPTCE AIACEPLESP LHGSMDCFPS TGAFGYNSSC TFRCTEGFVL 360
  361 MGNDAIHCAD LGQWTAPAPV CEALQCQEFP VPSKAQVSCS DPFGPLKYQS ACSFSCDEGS 420
  421 LLVGASVIRC LATGHWSEAP PECQAVSCTP LLSPENGTMT CIQPLGHSNY KSTCQFMCDE 480
  481 GFYLSGPERL DCSPSGHWTG SPPMCEAIKC PEIFAPEQGS LDCSHVHGEF SVGSTCHFSC 540
  541 NEEFELLGSR NVECTVSGRW SAPPPTCKGV TSLPVPSVRC PALTTPGQGT MSCRHHLESF 600
  601 GPNTTCYFGC KTGFTLRGAN SLRCGASGQW TAVTPVCRAV KCSELHMDTA VAMNCSNPWG 660
  661 NFSYGSTCAF HCPEGQSLNG SARTTCGEDG HWSDAMPTCQ AGTLTIQEAL TYLGGALAST 720
  721 SGLAVGGTLL ALLRKRLRKK DDGKCPLNPH SHLGTYGVFT NAAYDPTP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle