YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ICMT_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALLLLLYRPP HYQIAIRACF LGFVFGCGVL LSFSQSSWNH FGWYVCSLSL FHYSEYLVTT  60
   61 VNNPKSLSLD SFLLNHSLEY TVAALSSWIE FTLENIFWPE LKQITWLSAA GLLMVIFGEC 120
  121 LRKVAMFTAG SNFNHVVQSE KSDTHTLVTS GVYAWCRHPS YVGWFYWSIG TQVMLCNPIC 180
  181 GVVYALTVWR FFRDRTEEEE ISLIHFFGEE YLDYKKRVPT GLPFIKGVKV GL

Type	Start	End	Confidence
Cytoplasmic	1	13	0.86
Transmembrane Helix	14	34	0.93
Non-Cytoplasmic	35	75	0.73
Transmembrane Helix	76	93	0.60
Cytoplasmic	94	103	0.61
Transmembrane Helix	104	126	0.83
Non-Cytoplasmic	127	164	0.82
Transmembrane Helix	165	188	0.84
Cytoplasmic	189	232	0.88