YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HCDH_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFVTRQFVR SMSSSSSASA AAKKILIKHV TVIGGGLMGA GIAQVAAATG HTVVLVDQTE  60
   61 DILAKSKKGI EESLKRMAKK KFTENPKAAD EFVEKTLSSL STSTDAASVV HSTDLVVEAI 120
  121 VENLKLKNEL FQRLDKFAAE HTIFASNTSS LQITNIANAT TRQDRFAGLH FFNPVPMMKL 180
  181 VEVIKTPMTS QKTFESLVDF CKTLGKHPVS CKDTPGFIVN RLLVPYLIEA IRLHERGDAS 240
  241 KEDIDTAMKL GAGYPMGPFE LLDYVGLDTT KFILDGWHEM DPENPLFQPS PSMNNLVAQK 300
  301 KLGKKTGEGF YKYK

Type	Start	End	Confidence
Signal Peptide	1	47	0.66
N-region	1	38
H-region	39	44
C-region	45	47
Cleavage Site	47	48
Non-Cytoplasmic	48	314	0.99