YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S15A3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.95
Transmembrane Helix	34	54	0.86
Non-Cytoplasmic	55	71	0.83
Transmembrane Helix	72	94	0.87
Cytoplasmic	95	100	0.75
Transmembrane Helix	101	122	0.90
Non-Cytoplasmic	123	158	0.92
Transmembrane Helix	159	180	0.88
Cytoplasmic	181	199	0.93
Transmembrane Helix	200	220	0.96
Non-Cytoplasmic	221	228	0.79
Transmembrane Helix	229	252	0.88
Cytoplasmic	253	313	0.96
Transmembrane Helix	314	333	0.87
Non-Cytoplasmic	334	373	0.88
Transmembrane Helix	374	391	0.92
Cytoplasmic	392	407	0.84
Transmembrane Helix	408	429	0.89
Non-Cytoplasmic	430	462	0.94
Transmembrane Helix	463	485	0.86
Cytoplasmic	486	495	0.87
Transmembrane Helix	496	518	0.93
Non-Cytoplasmic	519	540	0.91
Transmembrane Helix	541	561	0.95
Cytoplasmic	562	582	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALRAEQQP SRSGERQPLV AQGRWGPRRW RRTAAAAVLL VEMLERAAFF GVTSNLVLYL  60
   61 NSLNFNWDGE HASRATLLFL GASYLLAPVG GWLADVYLGR FLAISLSLLL YLAATGLLLT 120
  121 TITDDGRRSF CGEMPELPLK PACPSANCQG SWSSPYCATT LYLVLLLLAL AASSVRSNLT 180
  181 SFGADQVMDL GRDATRRFFN WFYWSINLGA ILSLLVVAFI EQNISFLQGY SIIVGLVGLA 240
  241 FFIFLIATPV FITKPPTGSQ VSSMLNLAFQ NCCPGWQWWR RPSSRNSEGA HLLPDQRSNQ 300
  301 PGPSPQEDMA NFQVLLKVLP VMVTLVPYWM VYFQMQSTYV LQGLHLHIPN IFRTNPNISL 360
  361 PLRSDSSNYR IPEAWLLLAN VAVILILVPV KDHLIDPLLL RCKLLPSALQ KMALGMFFGF 420
  421 TSIIVAGVLE KERLQYIAAN QTVPQLIGKD LYYAAPLSIW WQIPQYLLIG ISEIFASIPG 480
  481 LEFAYSEAPR SMQGAIMGIF FCLSGVGSLL GSGLVALLSL PGGWMYCPKD FGNINNCRMD 540
  541 LYFFLLAGIQ AVTAVLFLWI AGRYERTRQD PDSQNSTSRV RG