YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14587824
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERLLSSYVSV HAESGKVFAL QPLDHEELEL LQFQVSARDA GVPALGSNVT LQVFVLDEND  60
   61 NAPTLLEPEA GISGGIVSRL VSRSVGAGHV VAKVRAVDAD SGYNAWLSYE LQSSEGNSRS 120
  121 LFRVGLYTGE ISTTRSLDEA DSPRQRLLVL VKDHGDPAMM VTATVLVSLV ENGPLPKAPS 180
  181 RVSTRVTNAE ASLVDVNVYL IIAICAVSSL LVLTLLLYSA LRCSTVPSES VCGPPKPVMV 240
  241 CSSAVGSWSY SQQRRQRVCS GEYPPKTDLM AFSPSLFDSR DREDQLQSTE DSSGKPRQPN 300
  301 PDWRYSASLR AGMHSSVHLE EAGILRAGPG GPDQQWPTV

Type	Start	End	Confidence
Cytoplasmic	1	197	0.62
Transmembrane Helix	198	220	0.82
Non-Cytoplasmic	221	339	0.67