YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAC1B_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	95	0.94
Transmembrane Helix	96	116	0.78
Non-Cytoplasmic	117	135	0.78
Transmembrane Helix	136	156	0.91
Cytoplasmic	157	165	0.72
Transmembrane Helix	166	184	0.45
Non-Cytoplasmic	185	222	0.46
Transmembrane Helix	223	245	0.87
Cytoplasmic	246	293	0.69
Transmembrane Helix	294	313	0.62
Non-Cytoplasmic	314	333	0.87
Transmembrane Helix	334	355	0.93
Cytoplasmic	356	483	0.98
Transmembrane Helix	484	505	0.94
Non-Cytoplasmic	506	512	0.86
Transmembrane Helix	513	532	0.90
Cytoplasmic	533	546	0.73
Transmembrane Helix	547	567	0.79
Non-Cytoplasmic	568	574	0.56
Transmembrane Helix	575	589	0.41
Cytoplasmic	590	609	0.53
Transmembrane Helix	610	632	0.90
Non-Cytoplasmic	633	686	0.49
Transmembrane Helix	687	710	0.81
Cytoplasmic	711	1144	0.57
Transmembrane Helix	1145	1167	0.86
Non-Cytoplasmic	1168	1185	0.54
Transmembrane Helix	1186	1207	0.77
Cytoplasmic	1208	1216	0.40
Transmembrane Helix	1217	1239	0.88
Non-Cytoplasmic	1240	1283	0.47
Transmembrane Helix	1284	1306	0.85
Cytoplasmic	1307	1396	0.58
Transmembrane Helix	1397	1419	0.95
Non-Cytoplasmic	1420	1476	0.91
Transmembrane Helix	1477	1495	0.92
Cytoplasmic	1496	1506	0.84
Transmembrane Helix	1507	1527	0.92
Non-Cytoplasmic	1528	1544	0.76
Transmembrane Helix	1545	1567	0.75
Cytoplasmic	1568	1597	0.68
Transmembrane Helix	1598	1617	0.89
Non-Cytoplasmic	1618	1640	0.63
Transmembrane Helix	1641	1658	0.45
Cytoplasmic	1659	1682	0.67
Transmembrane Helix	1683	1708	0.87
Non-Cytoplasmic	1709	2336	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRFGDELGG RYGGTGGGER ARGGGAGGAG GPGQGGLPPG QRVLYKQSIA QRARTMALYN  60
   61 PIPVKQNCFT VNRSLFVFSE DNVVRKYAKR ITEWPPFEYM ILATIIANCI VLALEQHLPD 120
  121 GDKTPMSERL DDTEPYFIGI FCFEAGIKII ALGFVFHKGS YLRNGWNVMD FVVVLTEILA 180
  181 TAGTDFDLRT LRAVRVLRPL KLVSGIPSLQ VVLKSIMKAM VPLLQIGLLL FFAILMFAII 240
  241 GLEFYMGKFH KACFPNSTDA EPVGDFPCGK EAPARLCDSD TECREYWPGP NFGITNFDNI 300
  301 LFAILTVFQC ITMEGWTDIL YNTNDAAGNT WNWLYFIPLI IIGSFFMLNL VLGVLSGEFA 360
  361 KERERVENRR AFLKLRRQQQ IERELNGYLE WIFKAEEVML AEEDKNAEEK SPLDAVLKRA 420
  421 ATKKSRNDLI HAEEGEDRFV DLCAAGSPFA RASLKSGKTE SSSYFRRKEK MFRFLIRRMV 480
  481 KAQSFYWVVL CVVALNTLCV AMVHYNQPQR LTTALYFAEF VFLGLFLTEM SLKMYGLGPR 540
  541 SYFRSSFNCF DFGVIVGSIF EVVWAAIKPG TSFGISVLRA LRLLRIFKVT KYWNSLRNLV 600
  601 VSLLNSMKSI ISLLFLLFLF IVVFALLGMQ LFGGQFNFQD ETPTTNFDTF PAAILTVFQI 660
  661 LTGEDWNAVM YHGIESQGGV SKGMFSSFYF IVLTLFGNYT LLNVFLAIAV DNLANAQELT 720
  721 KDEEEMEEAA NQKLALQKAK EVAEVSPMSA ANISIAARQQ NSAKARSVWE QRASQLRLQN 780
  781 LRASCEALYS EMDPEERLRY ASTRHVRPDM KTHMDRPLVV EPGRDGLRGP AGNKSKPEGT 840
  841 EATEGADPPR RHHRHRDRDK TSASTPAGGE QDRTDCPKAE STETGAREER ARPRRSHSKE 900
  901 APGADTQVRC ERSRRHHRRG SPEEATEREP RRHRAHRHAQ DSSKEGKEGT APVLVPKGER 960
  961 RARHRGPRTG PRETENSEEP TRRHRAKHKV PPTLEPPERE VAEKESNVVE GDKETRNHQP1020
 1021 KEPRCDLEAI AVTGVGSLHM LPSTCLQKVD EQPEDADNQR NVTRMGSQPS DPSTTVHVPV1080
 1081 TLTGPPGEAT VVPSANTDLE GQAEGKKEAE ADDVLRRGPR PIVPYSSMFC LSPTNLLRRF1140
 1141 CHYIVTMRYF EMVILVVIAL SSIALAAEDP VRTDSFRNNA LKYMDYIFTG VFTFEMVIKM1200
 1201 IDLGLLLHPG AYFRDLWNIL DFIVVSGALV AFAFSSFMGG SKGKDINTIK SLRVLRVLRP1260
 1261 LKTIKRLPKL KAVFDCVVNS LKNVLNILIV YMLFMFIFAV IAVQLFKGKF FYCTDESKEL1320
 1321 ERDCRGQYLD YEKEEVEAQP RQWKKYDFHY DNVLWALLTL FTVSTGEGWP MVLKHSVDAT1380
 1381 YEEQGPSPGF RMELSIFYVV YFVVFPFFFV NIFVALIIIT FQEQGDKVMS ECSLEKNERA1440
 1441 CIDFAISAKP LTRYMPQNKQ SFQYKTWTFV VSPPFEYFIM AMIALNTVVL MMKFYDAPYE1500
 1501 YELMLKCLNI VFTSMFSLEC ILKIIAFGVL NYFRDAWNVF DFVTVLGSIT DILVTEIANN1560
 1561 FINLSFLRLF RAARLIKLCR QGYTIRILLW TFVQSFKALP YVCLLIAMLF FIYAIIGMQV1620
 1621 FGNIALDDGT SINRHNNFRT FLQALMLLFR SATGEAWHEI MLSCLGNRAC DPHANASECG1680
 1681 SDFAYFYFVS FIFLCSFLML NLFVAVIMDN FEYLTRDSSI LGPHHLDEFI RVWAEYDPAA1740
 1741 CGRISYNDMF EMLKHMSPPL GLGKKCPARV AYKRLVRMNM PISNEDMTVH FTSTLMALIR1800
 1801 TALEIKLAPA GTKQHQCDAE LRKEISSVWA NLPQKTLDLL VPPHKPDEMT VGKVYAALMI1860
 1861 FDFYKQNKTT RDQTHQAPGG LSQMGPVSLF HPLKATLEQT QPAVLRGARV FLRQKSATSL1920
 1921 SNGGAIQTQE SGIKESLSWG TQRTQDVLYE ARAPLERGHS AEIPVGQPGA LAVDVQMQNM1980
 1981 TLRGPDGEPQ PGLESQGRAA SMPRLAAETQ PAPNASPMKR SISTLAPRPH GTQLCNTVLD2040
 2041 RPPPSQVSHH HHHRCHRRRD KKQRSLEKGP SLSVDTEGAP STAAGSGLPH GEGSTGCRRE2100
 2101 RKQERGRSQE RRQPSSSSSE KQRFYSCDRF GSREPPQPKP SLSSHPISPT AALEPGPHPQ2160
 2161 GSGSVNGSPL MSTSGASTPG RGGRRQLPQT PLTPRPSITY KTANSSPVHF AEGQSGLPAF2220
 2221 SPGRLSRGLS EHNALLQKEP LSQPLASGSR IGSDPYLGQR LDSEASAHNL PEDTLTFEEA2280
 2281 VATNSGRSSR TSYVSSLTSQ SHPLRRVPNG YHCTLGLSTG VRARHSYHHP DQDHWC