YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LT4R2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVCYRPPGN ETLLSWKGSR ATGTAFLLLA ALLGLPGNGF VVWSLAGWRP TAGRPLAATL  60
   61 VLHLALADGA VLLLTPLFVA FLSRQAWPLG QVGCKAVYYV CALSMYASVL LTGLLSLQRC 120
  121 LAVTRPFLAP RLRSPALARR LLLGVWLAAL VLAVPAAVYR HLWGDRVCQL CHPSAVHAAA 180
  181 HLSLETLTAF VLPFGTVLGC YGVTLARLRG ARWGSGRQGT RVGRLVSAIV LAFGLLWAPY 240
  241 HAVNLLQAVA ALAPPEGPLA RLGGAGQAAR AGTTALAFFS SSVNPVLYVF TAGDLLPRAG 300
  301 PRFLTRLFEG SGEARVGSRS REGTMELRTT PRLKVVGQGR GYGDPGGGGR MEKDSQEW

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.92
Transmembrane Helix	23	46	0.89
Cytoplasmic	47	58	0.82
Transmembrane Helix	59	81	0.90
Non-Cytoplasmic	82	95	0.88
Transmembrane Helix	96	117	0.88
Cytoplasmic	118	136	0.88
Transmembrane Helix	137	159	0.87
Non-Cytoplasmic	160	185	0.87
Transmembrane Helix	186	205	0.92
Cytoplasmic	206	221	0.86
Transmembrane Helix	222	243	0.88
Non-Cytoplasmic	244	271	0.89
Transmembrane Helix	272	292	0.83
Cytoplasmic	293	358	0.89