YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLTR2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVTGTPSYY SDKNCTIENF KRDFYPIIYL IIFVWGALGN GFSIYVFLQT YKKSTSVNVF  60
   61 MLNLAISDFL FISTLPFRAD YNFRGSDWIF GDWACRIMSY SLYVNMYTSI YFLTVLSIVR 120
  121 FLATAHPFQM LHITSVRSAW ILCGIIWVFI MASSGLLLKH GQEKKNNTTL CFELNLQKFK 180
  181 NLVILNYIAL GVGFLLPFFI LTICYLLIIR VLLKVEIPES GPRDAQRKAL TTIVIAMIIF 240
  241 LLCFLPYHAL RTIHLVTWDA DSCMDELHKA TVITLTLAAA NSCFNPFLYY FAGENFKARL 300
  301 RAIFSKDHL

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.91
Transmembrane Helix	27	48	0.94
Cytoplasmic	49	58	0.75
Transmembrane Helix	59	79	0.87
Non-Cytoplasmic	80	102	0.88
Transmembrane Helix	103	124	0.84
Cytoplasmic	125	135	0.79
Transmembrane Helix	136	158	0.84
Non-Cytoplasmic	159	186	0.94
Transmembrane Helix	187	209	0.92
Cytoplasmic	210	228	0.93
Transmembrane Helix	229	250	0.95
Non-Cytoplasmic	251	269	0.95
Transmembrane Helix	270	292	0.88
Cytoplasmic	293	309	0.93