YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLTR1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGAENMTAS FSNNRCHDTI DEFRNQVYST MYSMISVVGF FGNSFVLYVL IKTYHEKSAF  60
   61 QVYMINLAIA DLLCVCTLPL RVVYYVHKGK WFFGDFLCRL TTYALYVNLY CSIFFMTAMS 120
  121 FFRCVAIVFP VQNINLVTQK KARFVCVGIW IFVILTSSPF LLSKSYQDEK NNTKCFEPPQ 180
  181 DKQTKKYVLV LHYVSLIFGF IIPFVTIIVC YTMIILTLLK NTMKKNLPSR RKAIGMIIVV 240
  241 TAAFLVSFMP YHIQRAIHLH FLHSETRSCD SVLRMQKSVV ITLSLAASNC CFDPLLYFFS 300
  301 GGNFRRRLST FRKHSLSSMT YIPKKKASLP EKGEEMCKE

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.91
Transmembrane Helix	30	51	0.91
Cytoplasmic	52	61	0.83
Transmembrane Helix	62	84	0.91
Non-Cytoplasmic	85	103	0.88
Transmembrane Helix	104	127	0.83
Cytoplasmic	128	141	0.82
Transmembrane Helix	142	162	0.91
Non-Cytoplasmic	163	195	0.94
Transmembrane Helix	196	219	0.89
Cytoplasmic	220	232	0.94
Transmembrane Helix	233	253	0.95
Non-Cytoplasmic	254	279	0.95
Transmembrane Helix	280	301	0.79
Cytoplasmic	302	339	0.83