YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LFNG_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQRCGRRLL LALVGALLAC LLVLTADPPP TPVPAERGRR ALRSLAGSSG AAPGPGSRAA  60
   61 VDPGVLVREV HSLSEYFSLL TRARRDADPP PGVASRQGDG HPRPPAEVLS PRDVFIAVKT 120
  121 TRKFHRARLD LLFETWISRH KEMTFIFTDG EDEALAKHTG NVVLTNCSAA HSRQALSCKM 180
  181 AVEYDRFIES GKKWFCHVDD DNYVNLRALL RLLASYPHTQ DVYIGKPSLD RPIQATERIS 240
  241 EHRVRPVHFW FATGGAGFCI SRGLALKMGP WASGGHFMST AERIRLPDDC TIGYIVEALL 300
  301 GVPLIRSGLF HSHLENLQQV PTTELHEQVT LSYGMFENKR NAVHIKGPFS VEADPSRFRS 360
  361 IHCHLYPDTP WCPRTAIL

Type	Start	End	Confidence
Signal Peptide	1	35	0.91
N-region	1	26
H-region	27	32
C-region	33	35
Cleavage Site	35	36
Non-Cytoplasmic	36	378	0.83