YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1083623, gi\|5...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLKLNRSV QGPGPGSGSS LCRPGVSLLN SSSAGNLSCD PPRIRGTGTR ELEMAIRITL  60
   61 YAVIFLMSVG GNVLIIVVLG LSRRLRTVTN AFLLSLAVSD LLLAVACMPF TLLPNLMGTF 120
  121 IFGTVICKAI SYLMGPCYCY CFCSSSRVWL LRWPMDSSPA NST

Type	Start	End	Confidence
Non-Cytoplasmic	1	57	0.69
Transmembrane Helix	58	81	0.90
Cytoplasmic	82	90	0.66
Transmembrane Helix	91	113	0.88
Non-Cytoplasmic	114	119	0.67
Transmembrane Helix	120	143	0.77
Cytoplasmic	144	163	0.71