YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|31872397, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRAHHRGPGT EPTPKNGHQR LPALPGSQRP PAGRGLHALH TPAQPHGHIH LRHSHLQGHF  60
   61 LPHGVSVSVS TLNLVAIALE RYSAICRPLQ ARVWQTRSHA ARVILATWLL SGLLMVPYPV 120
  121 YTMVQPVGPR VLQCMHRWPS ARVQQTWSVL LLLLLFFIPG VVIAVAYGLI SRELYLGLHF 180
  181 DGENDSETQS RARNQGGLPG GAAPGPVHQN GGCRPVTSVA GEDSDGCCVQ LPRSRLEMTT 240
  241 LTTPTPGPVP GPRPNQAKLL AKKRVVRMLL VIVLLFFLCW LPVYSVNTWR AFDGPGAQRA 300
  301 LSGAPISFIH LLSYVSACVN PLVYCFMHRR FRQACLDTCA RCCPRPPRAR PQPLPDEDPP 360
  361 TPSIASLSRL SYTTISTLGP G

Type	Start	End	Confidence
Non-Cytoplasmic	1	59	0.60
Transmembrane Helix	60	79	0.60
Cytoplasmic	80	99	0.91
Transmembrane Helix	100	121	0.90
Non-Cytoplasmic	122	147	0.93
Transmembrane Helix	148	170	0.94
Cytoplasmic	171	264	0.99
Transmembrane Helix	265	286	0.91
Non-Cytoplasmic	287	305	0.87
Transmembrane Helix	306	326	0.92
Cytoplasmic	327	381	0.99