YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VIPR1_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	30	0.99
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	146	0.99
Transmembrane Helix	147	168	0.94
Cytoplasmic	169	176	0.91
Transmembrane Helix	177	195	0.93
Non-Cytoplasmic	196	228	0.82
Transmembrane Helix	229	249	0.82
Cytoplasmic	250	255	0.85
Transmembrane Helix	256	277	0.93
Non-Cytoplasmic	278	297	0.90
Transmembrane Helix	298	322	0.89
Cytoplasmic	323	340	0.96
Transmembrane Helix	341	362	0.89
Non-Cytoplasmic	363	375	0.83
Transmembrane Helix	376	397	0.88
Cytoplasmic	398	459	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPPSPPHVR WLCVLAGALA CALRPAGSQA ASPQHECEYL QLIEIQRQQC LEEAQLENET  60
   61 TGCSKMWDNL TCWPTTPRGQ AVVLDCPLIF QLFAPIHGYN ISRSCTEEGW SQLEPGPYHI 120
  121 ACGLNDRASS LDEQQQTKFY NTVKTGYTIG YSLSLASLLV AMAILSLFRK LHCTRNYIHM 180
  181 HLFMSFILRA TAVFIKDMAL FNSGEIDHCS EASVGCKAAV VFFQYCVMAN FFWLLVEGLY 240
  241 LYTLLAVSFF SERKYFWGYI LIGWGVPSVF ITIWTVVRIY FEDFGCWDTI INSSLWWIIK 300
  301 APILLSILVN FVLFICIIRI LVQKLRPPDI GKNDSSPYSR LAKSTLLLIP LFGIHYVMFA 360
  361 FFPDNFKAQV KMVFELVVGS FQGFVVAILY CFLNGEVQAE LRRKWRRWHL QGVLGWSSKS 420
  421 QHPWGGSNGA TCSTQVSMLT RVSPSARRSS SFQAEVSLV