YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GLR_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.98
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	145	0.99
Transmembrane Helix	146	167	0.93
Cytoplasmic	168	175	0.91
Transmembrane Helix	176	199	0.83
Non-Cytoplasmic	200	229	0.83
Transmembrane Helix	230	253	0.71
Cytoplasmic	254	263	0.84
Transmembrane Helix	264	286	0.92
Non-Cytoplasmic	287	305	0.94
Transmembrane Helix	306	329	0.91
Cytoplasmic	330	347	0.93
Transmembrane Helix	348	369	0.88
Non-Cytoplasmic	370	383	0.90
Transmembrane Helix	384	405	0.89
Cytoplasmic	406	485	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLTQLHCPY LLLLLVVLSC LPKAPSAQVM DFLFEKWKLY SDQCHHNLSL LPPPTELVCN  60
   61 RTFDKYSCWP DTPPNTTANI SCPWYLPWYH KVQHRLVFKR CGPDGQWVRG PRGQSWRDAS 120
  121 QCQMDDDEIE VQKGVAKMYS SYQVMYTVGY SLSLGALLLA LVILLGLRKL HCTRNYIHGN 180
  181 LFASFVLKAG SVLVIDWLLK TRYSQKIGDD LSVSVWLSDG AVAGCRVATV IMQYGIIANY 240
  241 CWLLVEGVYL YSLLSITTFS EKSFFSLYLC IGWGSPLLFV IPWVVVKCLF ENVQCWTSND 300
  301 NMGFWWILRI PVLLAILINF FIFVRIIHLL VAKLRAHQMH YADYKFRLAR STLTLIPLLG 360
  361 VHEVVFAFVT DEHAQGTLRS TKLFFDLFFS SFQGLLVAVL YCFLNKEVQA ELLRRWRRWQ 420
  421 EGKALQEERM ASSHGSHMAP AGTCHGDPCE KLQLMSAGSS SGTGCEPSAK TSLASSLPRL 480
  481 ADSPT