YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM14C_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKDSGPLVP LHYYGFGYAA LVATGGIIGY AKAGSVPSLA AGLFFGGLAG LGAYQLSQDP  60
   61 RNVWVFLATS GTLAGIMGMR FYNSGKFMPA GLIAGASLLM VAPGVAKIQE ITTMP

Type	Start	End	Confidence
Cytoplasmic	1	9	0.80
Transmembrane Helix	10	31	0.88
Non-Cytoplasmic	32	35	0.67
Transmembrane Helix	36	56	0.88
Cytoplasmic	57	62	0.73
Transmembrane Helix	63	82	0.91
Non-Cytoplasmic	83	87	0.70
Transmembrane Helix	88	108	0.88
Cytoplasmic	109	115	0.76