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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109498327, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.60
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYQLDLLIG VVFMASPVLE MSPCFSDGRI ALFRGCNLTQ IPWVLNTTER LLLSFNYIST  60
   61 VVTTSFPLLE QLLLLELGTQ YARLTIGQEA FRNLPNLRIL DLGQSQIEVL NPDAFQGLPH 120
  121 LFELRLFDCG LSNAVLRDAY FRNLNSLARL DLSANEIHSL HLHSSFQELS SLSDINFSFN 180
  181 RIFTLCEDEL QPLQGRTLSF FGLKSTSLFS RVFVDWEACR NPLRGIRLET LDLSENGWTA 240
  241 AILGNFSHTI QGSHISSLIL TYHIMGSGFG FQNIKDPDQS TFASLARSSV LQLDLSHGYI 300
  301 FSLNPRLFET LKDLKKLNLA FNKINKISDY AFHGLDSLQI LNLSYNLLGE LYNSNFYGLP 360
  361 SIAYLDLQRN HIGIIQDRTF RLLKKLQTLD LRDNALKTIG FIPSVQMVLL GSNKLTHLPH 420
  421 VRFTANFIEL SENGLENLSD LYFLLRIPGL QFLILNQNRL SSCSNVDYAP SQNLSLEQLF 480
  481 LAENMLQLAW ETGLCWDIFK GLSRLQILYL NNNYLNFLPP GIFNGLVALR MLSLSANRLT 540
  541 MLSPGSLPAN LEILDISRNQ LFSPDPGLFS SLRALDITHN EFICDCELST FIVWLNQTNV 600
  601 TLFGSPADVY CMYPNSLLGS SLYNISTKDC DEEEAVRSLN FSLFILCTVT LTLFLVITLI 660
  661 VTKFRGICFL CFKTIQKLMF KGKFRNPEPS AYRYDAYFCF SSKDFEWAQN ALLKHLDAQY 720
  721 SSQNRLRLCF EERDFIPGEN HISNIQAAVW GSRKTVCLVS RHFLKDGWCL EAFRYAQSRC 780
  781 LSDLKRVLIV VVVGSLPQYQ LMRHETIRGF LQKQQYLRWP EDLQDVDWFL DKLSGCILKE 840
  841 EKGKKRSSPI QLRTIRTVS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle