YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UBIA1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.89
Transmembrane Helix	50	73	0.60
Non-Cytoplasmic	74	81	0.54
Transmembrane Helix	82	105	0.70
Cytoplasmic	106	130	0.55
Transmembrane Helix	131	152	0.89
Non-Cytoplasmic	153	159	0.45
Transmembrane Helix	160	180	0.89
Cytoplasmic	181	182	0.46
Transmembrane Helix	183	205	0.65
Non-Cytoplasmic	206	209	0.46
Transmembrane Helix	210	229	0.78
Cytoplasmic	230	242	0.87
Transmembrane Helix	243	262	0.93
Non-Cytoplasmic	263	270	0.67
Transmembrane Helix	271	294	0.90
Cytoplasmic	295	314	0.91
Transmembrane Helix	315	335	0.92
Non-Cytoplasmic	336	338	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVQAPGEK INIQAGETTQ VGDTDQQRND WPEEDRLPER SWRQKCASYV LALRPWSFSA  60
   61 SLTPVALGSA LAYRSQGVLD PRLLLGCAVA VLAVHGAGNL VNTYYDFSKG IDHKKSDDRT 120
  121 LVDRILEPQD VVRFGVFLYT LGCVCAAYLY YLSTLKLEHL ALIYFGGLSG SFLYTGGIGF 180
  181 KYVALGDLVI LITFGPLAVM FAYAVQVGSL AIFPLVYAIP LALSTEAILH SNNTRDMESD 240
  241 REAGIVTLAI LIGPTLSYIL YNTLLFLPYL IFTILATHCS ISLALPLLTS PMAFSLERQF 300
  301 RSQAFNKLPQ RTAKLNLLLG LFYVFGIILA PAGSLPRL