YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCNA3_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVVPGDHLL EPEAAGGGGG DPPQGGCGSG GGGGGCDRYE PLPPALPAAG EQDCCGERVV  60
   61 INISGLRFET QLKTLCQFPE TLLGDPKRRM RYFDPLRNEY FFDRNRPSFD AILYYYQSGG 120
  121 RIRRPVNVPI DIFSEEIRFY QLGEEAMEKF REDEGFLREE ERPLPRRDFQ RQVWLLFEYP 180
  181 ESSGPARGIA IVSVLVILIS IVIFCLETLP EFRDEKDYPA SPSQDVFEAA NNSTSGAPSG 240
  241 ASSFSDPFFV VETLCIIWFS FELLVRFFAC PSKATFSRNI MNLIDIVAII PYFITLGTEL 300
  301 AERQGNGQQA MSLAILRVIR LVRVFRIFKL SRHSKGLQIL GQTLKASMRE LGLLIFFLFI 360
  361 GVILFSSAVY FAEADDPSSG FNSIPDAFWW AVVTMTTVGY GDMHPVTIGG KIVGSLCAIA 420
  421 GVLTIALPVP VIVSNFNYFY HRETEGEEQA QYMHVGSCQH LSSSAEELRK ARSNSTLSKS 480
  481 EYMVIEEGGM NHSAFPQTPF KTGNSTATCT TNNNPNSCVN IKKIFTDV

Type	Start	End	Confidence
Cytoplasmic	1	185	0.92
Transmembrane Helix	186	206	0.88
Non-Cytoplasmic	207	247	0.88
Transmembrane Helix	248	269	0.88
Cytoplasmic	270	279	0.82
Transmembrane Helix	280	298	0.82
Non-Cytoplasmic	299	308	0.66
Transmembrane Helix	309	327	0.78
Cytoplasmic	328	350	0.91
Transmembrane Helix	351	372	0.93
Non-Cytoplasmic	373	386	0.84
Transmembrane Helix	387	404	0.72
Cytoplasmic	405	411	0.58
Transmembrane Helix	412	433	0.89
Non-Cytoplasmic	434	528	0.75