YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126256505
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTLLFLPLP MDSNRTVVHV LSRTLYHMLL WTAVLNLVAE SHAGLPKAVV KLEPPWIQVL  60
   61 KEDTVTLMCE GTHNTKNCST QWFHNGSSIW HQAQANYTFK ATVNDSGEYR CRMEETGISE 120
  121 PIHLGVISDW LLLQTSQLVF EEGETITLRC HSWKNKQLTK VLLFQNGKPV RYYHQSSNFS 180
  181 IPKANHSHSG NYYCKAYLGR TMHVSKPVTI TVQEPKSSSS LPVLTIVAAV AGIAVAAIVI 240
  241 ILVSLVYLKK KQVPALPGNP DHREMGEALP EELGEYRKPS GGSVPVSPGP PSGLDPTRSS 300
  301 SYTPSGLEEA EKNEVENTIT YSLLKHPEAP DEESDHDYQN HI

Type	Start	End	Confidence
Non-Cytoplasmic	1	222	0.91
Transmembrane Helix	223	247	0.90
Cytoplasmic	248	342	0.94