YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC5A5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.88
Transmembrane Helix	17	37	0.93
Cytoplasmic	38	53	0.84
Transmembrane Helix	54	76	0.87
Non-Cytoplasmic	77	90	0.81
Transmembrane Helix	91	114	0.85
Cytoplasmic	115	132	0.88
Transmembrane Helix	133	154	0.92
Non-Cytoplasmic	155	161	0.79
Transmembrane Helix	162	182	0.91
Cytoplasmic	183	191	0.72
Transmembrane Helix	192	212	0.91
Non-Cytoplasmic	213	241	0.92
Transmembrane Helix	242	261	0.95
Cytoplasmic	262	281	0.90
Transmembrane Helix	282	306	0.91
Non-Cytoplasmic	307	340	0.93
Transmembrane Helix	341	364	0.82
Cytoplasmic	365	383	0.90
Transmembrane Helix	384	408	0.85
Non-Cytoplasmic	409	415	0.71
Transmembrane Helix	416	437	0.90
Cytoplasmic	438	444	0.80
Transmembrane Helix	445	466	0.93
Non-Cytoplasmic	467	522	0.96
Transmembrane Helix	523	544	0.93
Cytoplasmic	545	618	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGAEAGARA TFGAWDYGVF ATMLLVSTGI GLWVGLARGG QRSADDFFTG GRQLAAVPVG  60
   61 LSLAASFMSA VQVLGVPAEA ARYGLKFLWM CAGQLLNSLL TAFLFLPIFY RLGLTSTYQY 120
  121 LELRFSRAVR LCGTLQYLVA TMLYTGIVIY APALILNQVT GLDIWASLLS TGIICTLYTT 180
  181 VGGMKAVVWT DVFQVVVMLV GFWVILARGV ILLGGPRNVL SLAQNHSRIN LMDFDPDPRS 240
  241 RYTFWTFIVG GTLVWLSMYG VNQAQVQRYV ACHTEGKAKL ALLVNQLGLF LIVASAACCG 300
  301 IVMFVYYKDC DPLLTGRISA PDQYMPLLVL DIFEDLPGVP GLFLACAYSG TLSTASTSIN 360
  361 AMAAVTVEDL IKPRMPGLAP RKLVFISKGL SFIYGSACLT VAALSSLLGG GVLQGSFTVM 420
  421 GVISGPLLGA FTLGMLLPAC NTPGVLSGLA AGLAVSLWVA VGATLYPPGE QTMGVLPTSA 480
  481 AGCTNDSVLL GPPGATNASN GIPSSGMDTG RPALADTFYA ISYLYYGALG TLTTMLCGAL 540
  541 ISYLTGPTKR SSLGPGLLWW DLARQTASVA PKEDTATLEE SLVKGPEDIP AVTKKPPGLK 600
  601 PGAETHPLYL GHDVETNL