YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S26A3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.98
Transmembrane Helix	72	94	0.89
Non-Cytoplasmic	95	102	0.64
Transmembrane Helix	103	120	0.90
Cytoplasmic	121	126	0.71
Transmembrane Helix	127	147	0.78
Non-Cytoplasmic	148	168	0.76
Transmembrane Helix	169	198	0.75
Cytoplasmic	199	201	0.45
Transmembrane Helix	202	222	0.72
Non-Cytoplasmic	223	249	0.78
Transmembrane Helix	250	268	0.82
Cytoplasmic	269	280	0.78
Transmembrane Helix	281	300	0.64
Non-Cytoplasmic	301	305	0.51
Transmembrane Helix	306	323	0.32
Cytoplasmic	324	332	0.50
Transmembrane Helix	333	356	0.84
Non-Cytoplasmic	357	367	0.55
Transmembrane Helix	368	386	0.83
Cytoplasmic	387	404	0.56
Transmembrane Helix	405	425	0.95
Non-Cytoplasmic	426	431	0.56
Transmembrane Helix	432	451	0.63
Cytoplasmic	452	462	0.86
Transmembrane Helix	463	487	0.91
Non-Cytoplasmic	488	757	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEAIGNQYV VARPVYSTKA FGEEFKKTYG HHKTFLDHLK GCCSCSSQKA KKIALSLFPI  60
   61 ASWLPAYKIK EWLLSDIVSG ISTGLVAVLQ GLAFALLVNI PPAYGLYAAF FPVITYFFLG 120
  121 TSRHISVGPF PVLSMMVGVV VTRVASGSDT SPALSSSSAE NDSMIEEKVM VAASVTVLSG 180
  181 IIQLLLGVLQ IGFVVIYLSE SLISGFTTAA AIHVLVSQLK FMLQLTVPAH SDPFSIFKVL 240
  241 ESVFSQIQKT NIADLVTSVI ILVVVFVVKE INQRYRSKLP VPIPIELIMT VIATGISYGC 300
  301 NFEQRFGVAV VGNMSLGFQP PITPSVEVFQ DTIGDCFGIA IVGFAVAFSV ASVYSLKYDY 360
  361 PIDGNQELIA LGVSNIFTGA FKGFAGSTAL SRSGVQESTG GKTQVAGLLS AVIVLIVIVA 420
  421 IGFLLQPLQK SVLAALALGN LKGMLMQFAE IGRLWKKDKY DCLIWIMTFI FAIVLGLGLG 480
  481 LAASVAFQLL TIVFRTQFPK CSTLANVGRS NIYKNKKNYA DVYEPEGVKI FRCPSPIYFA 540
  541 NIGFFKQKLI DAVGFNPLRI LRKRNKALKK IRKLQKQGLI QVTPKGFICT SDGFKDSDEE 600
  601 LDNNQIEELD QPINTTDLPF EIDWNADLPL NITIPKISLH SLILDFSAVS FLDISSMRGL 660
  661 RTILQEFIRI KVDVYIVGTD DDFIDKLARC EFFDDEVTDS IFFLTIHDAI LHIWMKKDYS 720
  721 TSKFNSSQEK ERKFDFTINT NGGLRNRECQ VPVETKF