YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18543349, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSGTGTLV ASIASKVASS VAVVKAGGAV SSTILASSQG LNLLAQTALG SGASALGSAL  60
   61 GALKAGTVLS SLPASALAVC PIGVKTAVAM LGGAVTVAAV PPVLSAMGFT GSGIATSSLA 120
  121 AKLMSVSAIA NGGGVATGGL VATLQSAGAA GLSMTSKVLL GSTGSAIVAN VMGVC

Type	Start	End	Confidence
Cytoplasmic	1	20	0.66
Transmembrane Helix	21	36	0.67
Non-Cytoplasmic	37	42	0.47
Transmembrane Helix	43	68	0.67
Cytoplasmic	69	75	0.40
Transmembrane Helix	76	110	0.70
Non-Cytoplasmic	111	122	0.42
Transmembrane Helix	123	149	0.71
Cytoplasmic	150	152	0.38
Transmembrane Helix	153	174	0.44
Non-Cytoplasmic	175	175	0.45