YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|16758808, gi|...
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTESGSDSE SKPDQEAEPQ EAAGPQEQAG AQAAPEPAGG NVEEQPGLEQ FPEAAAHSTP  60
   61 VKREVSDKDR DFAAAAAKQL EYQQFEDDKL SQKSSSSKLS RSPLKIVKRP KSMQCKVTLL 120
  121 DGSEYGCDVD KRSRGQVLFD KVCEHLNLLE KDYFGLTYRD AENQKNWLDP AKEIKKQIRS 180
  181 GAWHFSFNVK FYPPDPAQLS EDITRYYLCL QLRDDIVSGR LPCSFVTLAL LGSYTVQSEL 240
  241 GDYDPDECGN DYISEFRFAP NHTKELEDKV IELHKSHRGM TPAEAEMHFL ENAKKLSMYG 300
  301 VDLHHAKDSE GVEIMLGVCA SGLLIYRDRL RINRFAWPKV LKISYKRNNF YIKIRPGEFE 360
  361 QFESTIGFKL PNHRAAKRLW KVCVEHHTFF RLLLPEAPPK KFLTLGSKFR YSGRTQAQTR 420
  421 RASALIDRPA PYFERSSSKR YTMSRSLDGA SVNENHEIYM KDSMSAAEVG TGQYATTKVI 480
  481 SQTNLITTVT PEKKAEEEHV EEEDRRKKAE EATPVAALRH EGKSPGHGSD SCPLSPPSAH 540
  541 LDPPSPTELR RRCKEKERAS PGSAVPRAEL SSESDAQGKA YLGDQDVAFS YRQPAGKGTT 600
  601 LFSFSLQLPE SFPSLLDEDG YLSFPNLSET NLLPQSWQHF LPIRSPSLLP CFLFIFFFLL 660
  661 SASFSVPYAL TLSFPLALCL CFLEPKAASL SASLDNDPSD SSEEETDSER TDTAADGETS 720
  721 ATESDQEEDA ELKAQELDKT QDELVKHQTN ISELKRTFLE TSTETALTNE WEKRLSTSPV 780
  781 RLAARQEDAP MIEPLVPEET KQSSGEKLMD GSEILSLLES ARKPTEFIGG VSSTTQSWVQ 840
  841 KLETKTETIE TEVEPTPHPQ PLSTEKVLQE TVLVEERHVM NVHASGDASH TARDDVDATE 900
  901 SAPADRHSGN GKEGSSVTEA AKEQRGEEAD KSAPEQEQPA TVSQEEDQVS AIHSSEGLEQ 960
  961 KSHFESSTVK VESISVGSVS PGGVKLETST KEVPVVHTET KTITYESSQV DPGADLEPGV1020
 1021 LMSAQTITSE TTSTTTTTHI TKTVKGGISE TRIEKRIVIT GDADIDHDQA LAQAIKEAKE1080
 1081 QHPDMSVTKV VVHKETEITP EDGED

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle