YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S36A1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.90
Transmembrane Helix	53	71	0.86
Non-Cytoplasmic	72	76	0.77
Transmembrane Helix	77	98	0.91
Cytoplasmic	99	140	0.94
Transmembrane Helix	141	161	0.96
Non-Cytoplasmic	162	193	0.94
Transmembrane Helix	194	210	0.94
Cytoplasmic	211	217	0.71
Transmembrane Helix	218	239	0.92
Non-Cytoplasmic	240	256	0.93
Transmembrane Helix	257	277	0.93
Cytoplasmic	278	288	0.88
Transmembrane Helix	289	311	0.90
Non-Cytoplasmic	312	335	0.92
Transmembrane Helix	336	362	0.76
Cytoplasmic	363	374	0.81
Transmembrane Helix	375	392	0.87
Non-Cytoplasmic	393	398	0.59
Transmembrane Helix	399	421	0.78
Cytoplasmic	422	436	0.63
Transmembrane Helix	437	456	0.86
Non-Cytoplasmic	457	475	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTQRLRNED YHDYSSTDVS PEESPSEGLG SFSPGSYQRL GENSSMTWFQ TLIHLLKGNI  60
   61 GTGLLGLPLA VKNAGLLLGP LSLLVIGIVA VHCMGILVKC AHHLCRRLNK PFLDYGDTVM 120
  121 YGLECSPSTW IRNHSHWGRR IVDFFLVVTQ LGFCCVYFVF LADNFKQVIE AANGTTTNCN 180
  181 NNETVILTPT MDSRLYMLTF LPFLVLLSFI RNLRILSIFS LLANISMFVS LIMIYQFIVQ 240
  241 RIPDPSHLPL VAPWKTYPLF FGTAIFAFEG IGVVLPLENK MKDSQKFPLI LYLGMAIITV 300
  301 LYISLGSLGY LQFGADIKGS ITLNLPNCWL YQSVKLLYSI GIFFTYALQF YVAAEIIIPA 360
  361 IVSRVPERFE LVVDLSARTA MVCVTCVLAV LIPRLDLVIS LVGSVSSSAL ALIIPPLLEV 420
  421 TTYYGEGISP LTITKDALIS ILGFVGFVVG TYESLWELIQ PSHSDSSTNS TSAFI