YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CGT_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSYTPYFML LWSAVGIARA AKIIIVPPIM FESHLYIFKT LASALHERGH HTVFLLSEGR  60
   61 DIDPSNHYSL QRYPGIFNST TSDAFLQSKM RNIFSGRLTA VELVDILDHY TKNCDMMVGN 120
  121 QALIQGLKKE KFDLLLVDPN DMCGFVIAHL LGVKYAVFST GLWYPAEVGA PAPLAYVPEF 180
  181 NSLLTDRMNF LERMKNTGVY LISRMGVSFL VLPKYERIMQ KYNLLPAKSM YDLVHGSSLW 240
  241 MLCTDVALEF PRPTLPNVVY VGGILTKPAS PLPEDLQRWV DGAQEHGFVL VSFGAGVKYL 300
  301 SEDIANKLAG ALGRLPQKVI WRFSGTKPKN LGNNTKLIEW LPQNDLLGHS NIRAFLSHGG 360
  361 LNSIFETMYH GVPVVGIPLF GDHYDTMTRV QAKGMGILLE WNTVTEGELY DALVKVINNP 420
  421 SYRQRAQKLS EIHKDQPGHP VNRTTYWIDY ILRHDGAHHL RSAVHQISFC QYFLLDIAFV 480
  481 LLLGAVALYF IVSYVTKFIY RKVKSLCSRS THSTVNGHYQ NGILNGRYKG NGHIKHEKKV 540
  541 K

Type	Start	End	Confidence
Signal Peptide	1	20	0.97
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	471	0.99
Transmembrane Helix	472	495	0.87
Cytoplasmic	496	541	0.96