YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPR6_RAT
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNASAAALNE SQVVAVAAEG AAAAATAAGT PDTSEWGPPA ASAALGGGGG PNGSLELSSQ  60
   61 LPAGPSGLLL SAVNPWDVLL CVSGTVIAGE NALVVALIAS TPALRTPMFV LVGSLATADL 120
  121 LAGCGLILHF VFQYVVPSET VSLLMVGFLV ASFAASVSSL LAITVDRYLS LYNALTYYSR 180
  181 RTLLGVHLLL AATWTVSLGL GLLPVLGWNC LADRASCSVV RPLTRSHVAL LSTSFFVVFG 240
  241 IMLHLYVRIC QVVWRHAHQI ALQQHCLAPP HLAATRKGVG TLAVVLGTFG ASWLPFAIYC 300
  301 VVGSQEDPAI YTYATLLPAT YNSMINPIIY AFRNQEIQRA LWLLFCGCFQ SKVPFRSRSP 360
  361 SEV

Type	Start	End	Confidence
Cytoplasmic	1	11	0.67
Transmembrane Helix	12	29	0.48
Non-Cytoplasmic	30	75	0.71
Transmembrane Helix	76	99	0.74
Cytoplasmic	100	108	0.80
Transmembrane Helix	109	132	0.92
Non-Cytoplasmic	133	142	0.79
Transmembrane Helix	143	165	0.91
Cytoplasmic	166	182	0.89
Transmembrane Helix	183	206	0.89
Non-Cytoplasmic	207	226	0.87
Transmembrane Helix	227	247	0.93
Cytoplasmic	248	278	0.89
Transmembrane Helix	279	301	0.88
Non-Cytoplasmic	302	309	0.80
Transmembrane Helix	310	332	0.79
Cytoplasmic	333	363	0.79