YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NPY1R_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSTLFSRVE NYSVHYNVSE NSPFLAFEND DCHLPLAVIF TLALAYGAVI ILGVSGNLAL  60
   61 IIIILKQKEM RNVTNILIVN LSFSDLLVAV MCLPFTFVYT LMDHWVFGET MCKLNPFVQC 120
  121 VSITVSIFSL VLIAVERHQL IINPRGWRPN NRHAYIGITV IWVLAVASSL PFVIYQILTD 180
  181 EPFQNVSLAA FKDKYVCFDK FPSDSHRLSY TTLLLVLQYF GPLCFIFICY FKIYIRLKRR 240
  241 NNMMDKIRDS KYRSSETKRI NVMLLSIVVA FAVCWLPLTI FNTVFDWNHQ IIATCNHNLL 300
  301 FLLCHLTAMI STCVNPIFYG FLNKNFQRDL QFFFNFCDFR SRDDDYETIA MSTMHTDVSK 360
  361 TSLKQASPVA FKKISMNDNE KI

Type	Start	End	Confidence
Non-Cytoplasmic	1	42	0.92
Transmembrane Helix	43	65	0.91
Cytoplasmic	66	75	0.92
Transmembrane Helix	76	98	0.91
Non-Cytoplasmic	99	114	0.86
Transmembrane Helix	115	135	0.92
Cytoplasmic	136	154	0.91
Transmembrane Helix	155	175	0.96
Non-Cytoplasmic	176	214	0.90
Transmembrane Helix	215	234	0.95
Cytoplasmic	235	259	0.95
Transmembrane Helix	260	281	0.93
Non-Cytoplasmic	282	298	0.90
Transmembrane Helix	299	322	0.88
Cytoplasmic	323	382	0.99