YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAV3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTEEHTDLE ARIIKDIHCK EIDLVNRDPK NINEDIVKVD FEDVIAEPEG TYSFDGVWRV  60
   61 SYTTFTVSKY WCYRLLSTLL GVPLALLWGF LFACISFCHI WAVVPCIKSY LIEIQCISHI 120
  121 YSLCIRTFCN PLFAALGQVC SNIKVVLRRE G

Type	Start	End	Confidence
Cytoplasmic	1	78	0.84
Transmembrane Helix	79	103	0.84
Non-Cytoplasmic	104	122	0.71
Transmembrane Helix	123	140	0.46
Cytoplasmic	141	151	0.51