YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50927735, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISNITETY PTTTEYDYGD STPCQKTDVR AFGAGLLPPL YSFVFIIGVV GNILVILVLM  60
   61 QHRRLQSMTS IYLFNLAVSD LVFLFTLPFW IDYKLKDNWV FGDAMCKLLS GFYYLGLYSE 120
  121 IFFIILLTID RYLAIVHAVF SLRARTVTFG IITSIIIWAL AILASIPALC FFKAQWEFTH 180
  181 HTCSPHFPDE SLKTWKRFQA LKLNLLGLIL PLLVMIICYA GIIRILLRRP NEKKAKAVRL 240
  241 IFAITLLFFL LWTPYNLTVF VSAFQDVLFT NQCEQSKQLD LAIQVTEVIA YTHCCVNPII 300
  301 YVFVGERFRK YLRQLFQRHV AIPLAKWLPF FSVDQLERTS SLTPSTGEHE LSGGF

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.97
Transmembrane Helix	40	60	0.94
Cytoplasmic	61	70	0.86
Transmembrane Helix	71	91	0.96
Non-Cytoplasmic	92	111	0.91
Transmembrane Helix	112	134	0.83
Cytoplasmic	135	146	0.84
Transmembrane Helix	147	171	0.88
Non-Cytoplasmic	172	204	0.96
Transmembrane Helix	205	227	0.90
Cytoplasmic	228	236	0.94
Transmembrane Helix	237	259	0.85
Non-Cytoplasmic	260	288	0.91
Transmembrane Helix	289	305	0.62
Cytoplasmic	306	355	0.59