YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPAR3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNECHYDKRM DFFYNRSNTD TADEWTGTKL VIVLCVGTFF CLFIFFSNSL VIAAVITNRK  60
   61 FHFPFYYLLA NLAAADFFAG IAYVFLMFNT GPVSKTLTVN RWLLRQGLLD TSLTASLANL 120
  121 LVIAVERHMS IMRMRIHSNL TKKRVTLLIL LVWAIAIFMG AVPTLGWNCL CNISACSSLA 180
  181 PIYSRSYLIF WTVSNLLAFF IMVVVYVRIY MYVKRKTNVL SPHTSGSISR RRAPMKLMKT 240
  241 VMTVLGAFVV CWTPGLVVLL LDGLNCKQCN VQHVKRWFLL LALLNSVMNP IIYSYKDEDM 300
  301 YNTMRKMICC APHDSNAERH PSRIPSTIHS RSDTGSQYLE DSISQGQVCN KSSS

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.95
Transmembrane Helix	30	52	0.90
Cytoplasmic	53	64	0.75
Transmembrane Helix	65	86	0.94
Non-Cytoplasmic	87	106	0.86
Transmembrane Helix	107	125	0.93
Cytoplasmic	126	144	0.92
Transmembrane Helix	145	167	0.91
Non-Cytoplasmic	168	186	0.94
Transmembrane Helix	187	210	0.90
Cytoplasmic	211	239	0.94
Transmembrane Helix	240	261	0.92
Non-Cytoplasmic	262	276	0.89
Transmembrane Helix	277	295	0.73
Cytoplasmic	296	354	0.75