YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCNK9_RAT
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRQNVRTLS LIACTFTYLL VGAAVFDALE SDHEMREEEK LKAEEVRLRG KYNISSDDYQ  60
   61 QLELVILQSE PHRAGVQWKF AGSFYFAITV ITTIGYGHAA PGTDAGKAFC MFYAVLGIPL 120
  121 TLVMFQSLGE RMNTFVRYLL KRIKKCCGMR NTEVSMENMV TVGFFSCMGT LCLGAAAFSQ 180
  181 CEDWSFFHAY YYCFITLTTI GFGDFVALQS KGALQRKPFY VAFSFMYILV GLTVIGAFLN 240
  241 LVVLRFLTMN TDEDLLEGEV AQILAGNPRR VVVRVPQSRK RHHPMYFLRK YGRTLCYLCF 300
  301 PGANWGDDDD DDDDAVENVV VTTPVPPAVA AAAAAATPGP STRNVRATVH SVSCRVEEIP 360
  361 PDVLRNTYFR SPFGAIPPGM HTCGENHRLH IRRKSI

Type	Start	End	Confidence
Cytoplasmic	1	79	0.70
Transmembrane Helix	80	100	0.86
Non-Cytoplasmic	101	107	0.71
Transmembrane Helix	108	129	0.88
Cytoplasmic	130	158	0.82
Transmembrane Helix	159	179	0.94
Non-Cytoplasmic	180	187	0.75
Transmembrane Helix	188	208	0.95
Cytoplasmic	209	218	0.83
Transmembrane Helix	219	241	0.90
Non-Cytoplasmic	242	396	0.87