YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20386140, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.64
Transmembrane Helix	45	68	0.87
Non-Cytoplasmic	69	69	0.36
Transmembrane Helix	70	85	0.32
Cytoplasmic	86	87	0.45
Transmembrane Helix	88	110	0.79
Non-Cytoplasmic	111	119	0.62
Transmembrane Helix	120	142	0.89
Cytoplasmic	143	237	0.73
Transmembrane Helix	238	259	0.86
Non-Cytoplasmic	260	278	0.71
Transmembrane Helix	279	302	0.88
Cytoplasmic	303	311	0.74
Transmembrane Helix	312	336	0.88
Non-Cytoplasmic	337	349	0.64
Transmembrane Helix	350	371	0.86
Cytoplasmic	372	386	0.69
Transmembrane Helix	387	412	0.66
Non-Cytoplasmic	413	428	0.58
Transmembrane Helix	429	456	0.76
Cytoplasmic	457	562	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTEGANNM PKQVEVRMHD SHLSSEEPKH RNLGMRMCDK LGKNLLLSLT VFGVILGAVC  60
   61 GGLLRLAAPI HPDVVMLIAF PGDILMRMLK MLILPLIISS LITGLSGLDA KASGRLGTRA 120
  121 MVYYMSTTII AAVLGVILVL AIHPGNPKLK KQLGPGKKND EVSSLDAFLD LIRNLFPENL 180
  181 VQACFQQIQT VTKKVLVAPP SEEANTTKAV ISLLNETMNE APEETKIVIK KGLEFKDGMN 240
  241 VLGLIGFFIA FGIAMGKMGE QAKLMVEFFN ILNEIVMKLV IMIMWYSPLG IACLICGKII 300
  301 AIKDLEVVAR QLGMYMITVI VGLIIHGGIF LPLIYFVVTR KNPFSFFAGI FQAWITALGT 360
  361 ASSAGTLPVT FRCLEDNLGI DKRVTRFVLP VGATINMDGT ALYEAVAAIF IAQMNGVILD 420
  421 GGQIVTVSLT ATLASIGAAS IPSAGLVTML LILTAVGLPT EDISLLVAVD WLLDRMRTSV 480
  481 NVVGDSFGAG IVYHLSKSEL DTIDSQHRMH EDIEMTKTQS IYDDTKNHRE SNSNQCVNAA 540
  541 HNSVVIDECK VPFPFLDIET CI