YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157818429, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAGSGMEE VRVSVLTPLK LVGLVCIFLA LCLDLGAVLS PAWVTADHQY YLSLWESCRK  60
   61 PANLDSWHCE STLGSDWQIA TLALLLGGAA IILIAFLVGL ISICVGSRRR FYRPVAVMLF 120
  121 AAVVLQVCSL VLYPIKFIET VSLKIYHEFN WGYGLAWGAT IFSFGGAILY CLNPKNYEDY 180
  181 Y

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	44	0.91
Non-Cytoplasmic	45	81	0.95
Transmembrane Helix	82	105	0.91
Cytoplasmic	106	114	0.83
Transmembrane Helix	115	135	0.94
Non-Cytoplasmic	136	152	0.89
Transmembrane Helix	153	173	0.93
Cytoplasmic	174	181	0.95