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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|13929178, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRGGLLEVA LAFALLLESY TSHGADANLE AGSLKETRAN RAKRRGGGGH DALKGPNVCG  60
   61 SRYNAYCCPG WKTLPGGNQC IVPICRHSCG DGFCSRPNMC TCPSGQISPS CGSRSIQHCS 120
  121 IRCMNGGSCS DDHCLCQKGY IGTHCGQPVC ESGCLNGGRC VAPNRCACTY GFTGPQCERD 180
  181 YRTGPCFTVV SNQMCQGQLS GIVCTKTLCC ATVGRAWGHP CEMCPAQPHP CRRGFIPNIR 240
  241 TGACQDVDEC QAIPGLCQGG NCINTVGSFE CKCPAGHKFN EVSQKCEDID ECSTIPGVCD 300
  301 GGECTNTVSS YFCKCPPGFY TSPDGTRCVD VRPGYCYTAL TNGRCSNQLP QSITKMQCCC 360
  361 DVGRCWSPGV TVAPEMCPIR STEDFNKLCS VPLVIPGRPD YPPPPLGPLP PVQPVPGFPS 420
  421 GPVIPVPRPP PEYPYPSPSR EPPKVLPFNV TDYCQLVRYL CQNGRCIPTP GSYRCECNKG 480
  481 FQLDIRGECI DVDECEKNPC TGGECINNQG SYTCHCRAGY QSTLTRTECR DIDECLQNGR 540
  541 ICNNGRCINT DGSFHCVCNA GFHVTRDGKN CEDMDECSIR NMCLNGMCIN EDGSFKCICK 600
  601 PGFQLASDGR YCKDINECET PGICMNGRCV NTDGSYRCEC FPGLAVGLDG RVCVDTHMRS 660
  661 TCYGGYRRGQ CVKPLFGAVT KSECCCASTE YAFGEACQPC PAQNSAEYQA LCSSGPGMTS 720
  721 AGSDINECAL DPDICPNGIC ENLRGTYKCI CNSGYEVDIT GKNCVDINEC VLNSLLCDNG 780
  781 QCRNTPGSFV CTCPKGFVYK PDLKTCEDID ECESSPCING VCKNSPGSFI CECSPESTLD 840
  841 PTKTICIETI KGTCWQTVID GRCEININGA TLKSECCSSL GAAWGSPCTI CQVDPICGKG 900
  901 YSRIKGTQCE DINECEVFPG VCKNGLCVNS RGSFKCECPS GMTLDATGRI CLDIRLETCF 960
  961 LKYDDEECTL PIAGRHRMDA CCSSVGAAWG TEECEECPLR NSREYEELCP RGPGFATKDI1020
 1021 TNGKPFFKDI NECKMIPSLC THGKCRNTIG SFKCRCDSGF ALDSEERNCT DIDECRISPD1080
 1081 LCGRGQCVNT PGDFECKCDE GYESGFMMMK NCMDIDECQR DPLLCRGGIC HNTEGSYRCE1140
 1141 CPSGHQLSPN ISACIDINEC ELSANLCPHG RCVNLIGKYE CACNPGYHPT HDRLFCVDID1200
 1201 ECSIMNGGCE TFCTNSDGSY ECSCQPGFAL MPDQRSCTDI DECEDNPNIC DGGQCTNIPG1260
 1261 EYRCLCYDGF MASEDMKTCV DVNECDLNPN ICLSGTCENT KGSFICHCDM GYSGKKGKTG1320
 1321 CTDINECEIG AHNCGRHAVC TNTAGSFKCS CSPGWIGDGI KCTDLDECSN GTHMCSQHAD1380
 1381 CKNTMGSYRC LCKDGYTGDG FTCTDLDECS ENLNLSGNGQ CLNAPAGYRC ECDMGFVPSA1440
 1441 DGKACEDINE CSLPNICVFG TCHNLPGLFR CECEIGYELD RSGGNCTDVN ECLDPTTCIS1500
 1501 GNCVNTPGSY TCDCPPDFEL NPTRVGCVDT RSGNCYLDIR PRGDNGDTAC RNEIGVGVSK1560
 1561 ASCCCSLGKA WGTPCELCPP VNTSEYKILC PGGEGFRPNP ITVILEDIDE CQELPGLCQG1620
 1621 GKCINTFGSF QCRCPTGYYL NEDTRVCDDV NECETPGICG PGTCYNTVGN YTCICPPDYM1680
 1681 QVNGGNNCMD MRRSLCYRNY HADNQTCDGE LLFNMTKKMC CCSYNIGRAW NKPCEQCPIP1740
 1741 STDEFATLCG SQRPGFVIDI YTGLPVDIDE CREIPGVCEN GVCINMVGSF RCECPVGFFY1800
 1801 NDKLLVCEDI DECQNGPVCQ RNAECINTAG SYRCDCKPGY RLTSTGQCND RNECQEIPNI1860
 1861 CSHGQVIDTV GSFYCLCHTG FKTNIDQTMC LDINECERDA CGNGTCRNTI GSFNCRCNHG1920
 1921 FILSHNNDCI DVDECATGNG NLCRNGQCVN TVGSFQCRCN EGYEVAPDGR TCVDINECVL1980
 1981 DPGKCAPGTC QNLDGSYRCI CPPGYSLQND KCEDIDECVE EPEICALGTC SNTEGSFKCL2040
 2041 CPEGFSLSST GRRCQDLRMS YCYAKFEGGK CSSPKSRNHS KQECCCALKG EGWGDPCELC2100
 2101 PTEPDEAFRQ ICPFGSGIIV GPDDSAVDMD ECKEPDVCKH GQCINTDGSY RCECPFGYIL2160
 2161 EGNECVDTDE CSVGNPCGDG TCKNVIGGFE CTCEEGFEPG PMMTCEDINE CAQNPLLCAF2220
 2221 RCVNTYGSYE CKCPVGYVLR EDRRMCKDED ECAEGKHDCT EKQMECKNLI GTYMCICGPG2280
 2281 YQRRPDGEGC IDENECQTKP GICENGRCLN TLGSYTCECN DGFTASPTQD ECLDNREGYC2340
 2341 FSEVLQNMCQ IGSSNRNPVT KSECCCDGGR GWGPHCEICP FEGTVAYKKL CPHGRGFMTN2400
 2401 GADIDECKVI HDDCRNGECV NDRGSYHCIC KTGYTPDITG TACVDLNECN QAPKPCNFIC2460
 2461 KNTEGSYQCS CPKGYILQED GRSCKDLDEC ATKQHNCQFL CVNTIGGFTC KCPPGFTQHH2520
 2521 TACIDNNECT SEINLCGSKG VCQNTPGSFT CECQRGFSLD QSGASCEDVD ECEGNHRCQH2580
 2581 GCQNIIGGYR CSCPQGYLQH YQWNQCVDEN ECLSAHVCGG ASCHNTLGSY KCMCPAGFQY2640
 2641 EQFSGGCQDI NECGSSQAPC SYGCSNTEGG YLCGCPPGYL RIGQGHCVSG MGMGRGGPEP2700
 2701 PASGEMDDNS LSPEACYECK INGYPKRGRK RRSTNETDAS DIQDGSEMEA NVSLASWDVE2760
 2761 KPASFAFNIS HINNKVRILE LLPALTTLMN HNKYLIESGN EYGFFKINQK EGVSYLHFTK2820
 2821 KKPVAGTYSL QISSTPLYKK KELNQLEDRY DKDYLSGELG DNLKMKIQIL LH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle