YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S38A1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	76	0.93
Transmembrane Helix	77	97	0.80
Non-Cytoplasmic	98	100	0.63
Transmembrane Helix	101	124	0.81
Cytoplasmic	125	144	0.71
Transmembrane Helix	145	168	0.71
Non-Cytoplasmic	169	188	0.67
Transmembrane Helix	189	211	0.86
Cytoplasmic	212	216	0.57
Transmembrane Helix	217	238	0.91
Non-Cytoplasmic	239	273	0.68
Transmembrane Helix	274	294	0.66
Cytoplasmic	295	309	0.87
Transmembrane Helix	310	331	0.92
Non-Cytoplasmic	332	350	0.93
Transmembrane Helix	351	373	0.92
Cytoplasmic	374	387	0.91
Transmembrane Helix	388	409	0.92
Non-Cytoplasmic	410	415	0.80
Transmembrane Helix	416	437	0.92
Cytoplasmic	438	450	0.89
Transmembrane Helix	451	473	0.93
Non-Cytoplasmic	474	485	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMHFKSGLEL TELQNMTVPE DDNVSNDSND FTEVENGQIN SKFISDRESR RSLTNSHLEK  60
   61 RKCDEYIPGT TSLGMSVFNL SNAIMGSGIL GLAFALANTG ILLFLILLTS VTLLSIYSIN 120
  121 LLLICSKETG CMVYEKLGEQ VFGTTGKLVI FGATSLQNTG AMLSYLFIVK NELPSAIKSL 180
  181 MGEEETFSAW YVDGRVLVVM VTFGIILPLC LLKNLGYLGY TSGFSLSCMV FFLIVVIYKK 240
  241 FQIPCMNGEQ NSTVSANVTD ACTPKYVTFN SKTVYALPTI AFAFVCHPSV LPIYSELKDR 300
  301 SQKKMQMVSN ISFFAMFVMY FLTAIFGYLT FYEKVQSDLL HKYQSTGDIL ILTVRLAVIV 360
  361 AVILTVPVLF FTVRSSLFEL AKKTKFHLCR HVLVTIILLV IINLLVIFIP SMKDIFGVVG 420
  421 VTSANMLIFI LPSSLYLKIT NQDGDKNTQR IWAALFLALG VLFSLISIPL VIYDWACSSS 480
  481 NGEGH