YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109474792, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPARENVSL FFKLYCLTVM TLVAAAYTIA LRYTRTTAEG LYFSTTAVCI TEVIKLLISV  60
   61 GLLAKETGSL GRFKASLSEN VLGSPKELLK LSVPSLVYAV QNNMAFLALS NLDAAVYQVT 120
  121 YQLKIPCTAL CTVLMLNRSL SKLQWISVFM LCGGVTLVQW KPAQATKVVV AQNPLLGFGA 180
  181 IAIAVLCSGF AGVYFEKVLK SSDTSLWVRN IQMYLSGIAV TLAGTYLSDG AEIKEKGFFY 240
  241 GYTYYVWFVI FLASVGGLYT SVVVKYTDNI MKGFSAAAAI VLSTVASVIL FGLQITLSFT 300
  301 LGALLVCVSI YLYGLPRQDT TSIQQETTSK ERIIGV

Type	Start	End	Confidence
Cytoplasmic	1	10	0.88
Transmembrane Helix	11	31	0.94
Non-Cytoplasmic	32	40	0.81
Transmembrane Helix	41	64	0.84
Cytoplasmic	65	142	0.93
Transmembrane Helix	143	163	0.89
Non-Cytoplasmic	164	174	0.85
Transmembrane Helix	175	195	0.95
Cytoplasmic	196	205	0.91
Transmembrane Helix	206	227	0.86
Non-Cytoplasmic	228	242	0.83
Transmembrane Helix	243	263	0.93
Cytoplasmic	264	272	0.75
Transmembrane Helix	273	291	0.91
Non-Cytoplasmic	292	296	0.59
Transmembrane Helix	297	315	0.85
Cytoplasmic	316	336	0.80