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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: VAX1_RAT
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGKTDKMDV RCHSDTEAAR VSKNAHKESR EIKGAEGSLP AAFLKEPQGA FSASGASEDC  60
   61 NKSKSNSSAD PDYCRRILVR DAKGSIREII LPKGLDLDRP KRTRTSFTAE QLYRLEMEFQ 120
  121 RCQYVVGRER TELARQLNLS ETQVKVWFQN RRTKQKKDQG KDSELRSVVS ETAATCSVLR 180
  181 LLEQGRLLSP PGLPALLPPC ATGALGSALR GPSLPALGAG AAAGSAAAAA AAATAPGPAG 240
  241 AASQHPPAVG GAPGPGPAGP GGLHAGAPTA SHGLFSLPVP SLLGSVASRL SSAPLTMAGS 300
  301 LAGNLQELSA RYLSSSAFEP YSRTNNKEGA EKKALD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle