YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4868343
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKFVKRKVMD KYGEFGRDRI SELLGMDKVA LDFSDAREKK KPKKDSSLSA VLNSIDVKYQ  60
   61 MWKLGVVFTD DSFLYLAWYM TMSVLGHYNN FFFAAHLLDI AMGFKTLRTI LSSVTHNGKQ 120
  121 LVLTVGLLAV VVYLYTVVRF NFFRKFYNKS EDGDTPDMKC DDMLTCYMFH MYVGVRAEGC 180
  181 SEIEAPAGDE YEIYRIIFDI TFFFFVIVIL LAIIQGLIID AFGELRD

Type	Start	End	Confidence
Cytoplasmic	1	71	0.84
Transmembrane Helix	72	98	0.62
Non-Cytoplasmic	99	119	0.64
Transmembrane Helix	120	140	0.89
Cytoplasmic	141	199	0.71
Transmembrane Helix	200	219	0.94
Non-Cytoplasmic	220	227	0.63