YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MSRA_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSASRRTLQ LLSSSIPVRM MGDSSSKVIS AEEALPGRTE SIPVAAKHHV SGNRTVEPFP  60
   61 EGTQMAVFGM GCFWGAERKF WLLKGVYSTQ VGFAGGYTRN PTYKEVCSEK TGHAEVVRVV 120
  121 YRPEHVSFEE LLKVFWENHD PTQGMRQGND CGTQYRSAVY PTSAVQMEAA LKSKEEYQKV 180
  181 LSKHGFGPIT TDIREGQVFY YAEDYHQQYL SKNPDGYCGL GGTGVSCPTA IKK

Type	Start	End	Confidence
Signal Peptide	1	22	0.67
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	233	0.99