YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLPP2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERRWVFVLL DVLCVLVASL PFIILTLVNA PYKRGFYCGD DSIRYPYRPD TITHGLMAGV  60
   61 IITATVVLVS SGEAYLVYTD RLYSRSDFNN YVAAIYKVLG TFLFGAAVSQ SLTDLAKYMI 120
  121 GRLRPSFLAV CDPDWSRVNC SGYVQVEVCR GSPANVTEAR LSFYSGHSSF GMYCMLFLAL 180
  181 YVQARLCWKW ARLLRPTVQF FLVAFAIYVG YTRVSDNKHH WSDVLVGLLQ GALVACLTVC 240
  241 YVSDFFKSRP PQSCQENEES ERKPSLSLTL TLGDRP

Type	Start	End	Confidence
Cytoplasmic	1	6	0.91
Transmembrane Helix	7	28	0.93
Non-Cytoplasmic	29	54	0.90
Transmembrane Helix	55	77	0.90
Cytoplasmic	78	92	0.80
Transmembrane Helix	93	113	0.85
Non-Cytoplasmic	114	162	0.94
Transmembrane Helix	163	184	0.86
Cytoplasmic	185	192	0.80
Transmembrane Helix	193	212	0.89
Non-Cytoplasmic	213	223	0.72
Transmembrane Helix	224	243	0.91
Cytoplasmic	244	276	0.92