YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PRIMA_RAT
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLRDLVLRH GCCWPSLLLH CALHPLWGLV QVTHAEPQKS CSKVTDSCQH ICQCRPPPPL  60
   61 PPPPPPPPPP RLLSAPAPNS TSCPAEDSWW SGLVIIVAVV CASLVFLTVL VIICYKAIKR 120
  121 KPLRKDENGA SVAEYPMSSS PSNKGVDVNA AVV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.85
Transmembrane Helix	7	28	0.78
Non-Cytoplasmic	29	92	0.96
Transmembrane Helix	93	115	0.95
Cytoplasmic	116	153	0.99