YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZDHC7_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPSGHRLRD IEHHPLLTDN DNYDSASSSS SEADMADRVW FIRDGCGMVC AVMTWLLVVY  60
   61 ADFVVTFVML LPSKDFWYSV VNGVLFNCLA VLALSSHLRT MLTDPGAVPK GNATKEYMES 120
  121 LQLKPGEVIY KCPKCCCIKP ERAHHCSICK RCIRKMDHHC PWVNNCVGEK NQRFFVLFTM 180
  181 YIALSSIHAL ILCGLQFISC VRGQWTECSD FSPPITVILL VFLCLEGLLF FTFTAVMFGT 240
  241 QIHSICNDET EIERLKSEKP TWERRLRWEG MKSVFGGPPS LLWMNPFVGF RFRRLQMRTR 300
  301 KGGPEFSV

Type	Start	End	Confidence
Cytoplasmic	1	44	0.87
Transmembrane Helix	45	64	0.86
Non-Cytoplasmic	65	75	0.71
Transmembrane Helix	76	98	0.84
Cytoplasmic	99	176	0.86
Transmembrane Helix	177	198	0.90
Non-Cytoplasmic	199	214	0.74
Transmembrane Helix	215	236	0.91
Cytoplasmic	237	273	0.78
Transmembrane Helix	274	290	0.56
Non-Cytoplasmic	291	308	0.46