YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIPF5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGFDNLNSG FYQTSYSIDE QSQQSYDYGG SGGPYSKQYA GCEYSQQGRF VPPDMMQPQQ  60
   61 TYTGQIYQPT QAYPPPTPQT FYGDSFEEEP PLLEELGINF DHIWQKTLTV LHPLRASDGS 120
  121 IMNETDLAGP VVFCLAFGAT LLLAGKIQFG YVYGISAIGC LGMFCLLNLM SMTGVSFGCV 180
  181 ASVLGYCLLP MILLSSFAVV FSLQGMVGIL LTATIIGWCS FSASKIFISA LAMDGQQLLV 240
  241 AYPCALLYGV FALISVF

Type	Start	End	Confidence
Cytoplasmic	1	124	0.94
Transmembrane Helix	125	144	0.88
Non-Cytoplasmic	145	149	0.70
Transmembrane Helix	150	170	0.88
Cytoplasmic	171	176	0.65
Transmembrane Helix	177	201	0.82
Non-Cytoplasmic	202	206	0.59
Transmembrane Helix	207	228	0.86
Cytoplasmic	229	237	0.74
Transmembrane Helix	238	256	0.91
Non-Cytoplasmic	257	257	0.87