YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NPT2C_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.84
Transmembrane Helix	72	96	0.76
Non-Cytoplasmic	97	112	0.71
Transmembrane Helix	113	136	0.77
Cytoplasmic	137	151	0.56
Transmembrane Helix	152	175	0.77
Non-Cytoplasmic	176	186	0.67
Transmembrane Helix	187	208	0.72
Cytoplasmic	209	322	0.58
Transmembrane Helix	323	347	0.89
Non-Cytoplasmic	348	373	0.55
Transmembrane Helix	374	407	0.78
Cytoplasmic	408	417	0.65
Transmembrane Helix	418	437	0.91
Non-Cytoplasmic	438	447	0.66
Transmembrane Helix	448	467	0.93
Cytoplasmic	468	485	0.89
Transmembrane Helix	486	508	0.90
Non-Cytoplasmic	509	514	0.77
Transmembrane Helix	515	536	0.94
Cytoplasmic	537	601	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNSLAGDQV PNPTLDAIGL VDWSLRNAGT SGSTPGLEEG GTDPWTFSQL KNTDQLKEVG  60
   61 TASKLHQVVS GFLKACGLLG SLYFFICSLD ILSSAFQLLG SKMAGDIFKD NVVLSNPVAG 120
  121 LVIGVVVTVL VQSSSTSSSI VVSMVASKSL TVQASVPIIM GVNVGTSITS TLVSMAQSGD 180
  181 RDEFQRAFGG SAVHGIFNWL TVLVLLPLEN ATAALERLSE LALGAASLQP GGQAPDILKA 240
  241 LTRPFTHLII QLDSSVVTSS ITSNTTNSSL IKHWCGFRGE TPQGSSEECD LSGSCTERNS 300
  301 SASPGEDRLL CHHLFAGSEL TDLAVGFILL AGSLLVLCVC LVLIVKLLNS VLRGRIAQAV 360
  361 KTVINADFPF PFGWLSGYLA ILVGAGLTFL LQSSSVFTAA IVPLMGVGVI NLERAYPLFL 420
  421 GSNIGTTTTA LLAALASPAD TLLFAVQVAL IHFFFNLAGI LLWYLVPVLR LPIPLAKRFG 480
  481 DLTAQYRWVA IVYLLLTFLL LPLAAFGLSL AGGSVLAAVG GPLVGLVLLI ILVNVLQRHR 540
  541 PSWLPRRLQS WAWLPLWLHS LEPWDRLVTG CCPFKAYSNS HMTSKVAHCY ENPQVIASQQ 600
  601 L