YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: MBTP1_RAT, MS1P_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLVNIWLLL LVVLLCGKKH LGDRLGKKAF EKAPCPSCSH LTLKVEFSST VVEYEYIVAF  60
   61 NGYFTAKARN SFISSALKSS EVDNWRIIPR NNPSSDYPSD FEVIQIKEKQ KAGLLTLEDH 120
  121 PNIKRVTPQR KVFRSLKFAE SDPIVPCNET RWSQKWQSSR PLKRASLSLG SGFWHATGRH 180
  181 SSRRLLRAIP RQVAQTLQAD VLWQMGYTGA NVRVAVFDTG LSEKHPHFKN VKERTNWTNE 240
  241 RTLDDGLGHG TFVAGVIASM RECQGFAPDA ELHIFRVFTN NQVSYTSWFL DAFNYAILKK 300
  301 MDVLNLSIGG PDFMDHPFVD KVWELTANNV IMVSAIGNDG PLYGTLNNPA DQMDVIGVGG 360
  361 IDFEDNIARF SSRGMTTWEL PGGYGRVKPD IVTYGAGVRG SGVKGGCRAL SGTSVASPVV 420
  421 AGAVTLLVST VQKRELVNPA SVKQALIASA RRLPGVNMFE QGHGKLDLLR AYQILSSYKP 480
  481 QASLSPSYID LTECPYMWPY CSQPIYYGGM PTIVNVTILN GMGVTGRIVD KPEWRPYLPQ 540
  541 NGDNIEVAFS YSSVLWPWSG YLAISISVTK KAASWEGIAQ GHIMITVASP AETELKNGAE 600
  601 HTSTVKLPIK VKIIPTPPRS KRVLWDQYHN LRYPPGYFPR DNLRMKNDPL DWNGDHVHTN 660
  661 FRDMYQHLRS MGYFVEVLGA PFTCFDATQY GTLLMVDSEE EYFPEEIAKL RRDVDNGLSL 720
  721 VVFSDWYNTS VMRKVKFYDE NTRQWWMPDT GGANVPALNE LLSVWNMGFS DGLYEGEFAL 780
  781 ANHDMYYASG CSIARFPEDG VVITQTFKDQ GLEVLKQETA VVDNVPILGL YQIPAEGGGR 840
  841 IVLYGDSNCL DDSHRQKDCF WLLDALLQYT SYGVTPPSLS HSGNRQRPPS GAGLAPPERM 900
  901 EGNHLHRYSK VLEAHLGDPK PRPLPACPHL SWAKPQPLNE TAPSNLWKHQ KLLSIDLDKV 960
  961 VLPNFRSNRP QVRPLSPGES GAWDIPGGIM PGRYNQEVGQ TIPVFAFLGA MVALAFFVVQ1020
 1021 ISKAKSRPKR RRPRAKRPQL AQQAHPARTP SV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle