YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AQP6_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPGLCNRAY LLVGGLWTAI SKALFAEFLA TGLYVFFGVG SVLPWPVALP SVLQVAITFN  60
   61 LATATAVQIS WKTSGAHANP AVTLAYLVGS HISLPRAVAY IAAQLAGATV GAALLYGVTP 120
  121 GGVRETLGVN VVHNSTSTGQ AVAVELVLTL QLVLCVFASM DSRQTLGSPA AMIGTSVALG 180
  181 HLIGIYFTGC SMNPARSFGP AVIVGKFAVH WIFWVGPLTG AVLASLIYNF ILFPDTKTVA 240
  241 QRLAILVGTT KVEKVVDLEP QKKESQTNSE DTEVSV

Type	Start	End	Confidence
Cytoplasmic	1	9	0.87
Transmembrane Helix	10	37	0.69
Non-Cytoplasmic	38	46	0.54
Transmembrane Helix	47	71	0.67
Cytoplasmic	72	96	0.72
Transmembrane Helix	97	119	0.85
Non-Cytoplasmic	120	137	0.84
Transmembrane Helix	138	158	0.87
Cytoplasmic	159	168	0.70
Transmembrane Helix	169	190	0.89
Non-Cytoplasmic	191	209	0.84
Transmembrane Helix	210	232	0.93
Cytoplasmic	233	276	0.91