YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LSR_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAAGACAG APDSHPATVV FVCLFLIIFC PDPASAIQVT VSDPYHVVIL FQPVTLPCTY  60
   61 QMSNTLTVPI VIWKYKSFCR DRIADAFSPA SVDNQLNAQL AAGNPGYNPY VECQDSVRTV 120
  121 RVVATKQGNA VTLGDYYQGR RITITGNADL TFEQTAWGDS GVYYCSVVSA QDLDGNNEAY 180
  181 AELIVLGRTS EAPELLPGFR AGPLEDWLFV VVVCLASLLL FLLLGICWCQ CCPHTCCCYV 240
  241 RCPCCPDKCC CPEALYAAGK AATSGVPSIY APSIYTHLSP AKTPPPPPAM IPMGPPYGYP 300
  301 GDFDRHSSVG GHSSQVPLLR DVDGSVSSEV RSGYRIQANQ QDDSMRVLYY MEKELANFDP 360
  361 SRPGPPNGRV ERAMSEVTSL HEDDWRSRPS RAPALTPIRD EEWNRHSPQS PRTWEQEPLQ 420
  421 EQPRGGWGSG RPRARSVDAL DDINRPGSTE SGRSSPPSSG RRGRAYAPPR SRSRDDLYDP 480
  481 DDPRDLPHSR DPHYYDDIRS RDPRADPRSR QRSRDPRDAG FRSRDPQYDG RLLEEALKKK 540
  541 GSGERRRVYR EEEEEEEGQY PPAPPPYSET DSQASRERRL KKNLALSRES LVV

Type	Start	End	Confidence
Signal Peptide	1	36	0.54
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	593	0.80