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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: STXB5_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKFNIRKVL DGLTAGSSSA SQQQQQQQHP PGNREPEIQE TLQSEHFQLC KTVRHGFPYQ  60
   61 PSALAFDPVQ KILAVGTQTG ALRLFGRPGV ECYCQHDSGA AVIQLQFLIN EGALVSALAD 120
  121 DTLHLWNLRQ KRPAVLHSLK FCRERVTFCH LPFQSKWLYV GTERGNIHIV NVESFTLSGY 180
  181 VIMWNKAIEL SSKSHPGPVV HISDNPMDEG KLLIGFESGT VVLWDLKSKK ADYRYTYDEA 240
  241 IHSVAWHHEG KQFICSHSDG TLTIWNVRSP TKPVQTITPH GKQLKDGKKP EPCKPILKVE 300
  301 FKTTRSGEPF IILSGGLSYD TVGRRPCLTV MHGKSTAVLE MDYSIVDFLT LCETPYPNDF 360
  361 QEPYAVVVLL EKDLVLIDLA QNGYPIFENP YPLSIHESPV TCCEYFADCP VDLIPALYSV 420
  421 GARQKRQGYS KKEWPINGGN WGLGAQSYPE IIITGHADGS IKFWDASAIT LQVLYKLKTS 480
  481 KVFEKSRNKD DRQNTDIVDE DPYAIQIISW CPESRMLCIA GVSAHVIIYR FSKQEVVTEV 540
  541 IPMLEVRLLY EINDVETPEG EQPPPLSTPV GSSTSQPIPP QSHPSTSSSS SDGLRDNVPC 600
  601 LKVKNSPLKQ SPGYQTELVI QLVWVGGEPP QQITSLALNS SYGLVVFGNS NGIAMVDYLQ 660
  661 KAVLLNLSTI ELYGSNDPYR REPRSPRKSR QPSGAGLCDI TEGTVVPEDR CKSPTSGSSS 720
  721 PHNSDDEQKV NNFIEKVKTQ SRKFSKMVAS DLAKMSRKLS LPTDLKPDLD VKDNSFSRSR 780
  781 SSSVTSIDKE SREAISALHF CETFTRKADS SPSPCLWVGT TVGTAFVITL NLPLGPEQRL 840
  841 LQPVIVSPSG TILRLKGAIL RMAFLDAAGC LMPPAYEPWT EHNVPEEKDE KEKLKKRRPV 900
  901 SVSPSSSQEI SENQYAVICS EKQAKVISLP TQNCAYKQNI TETSFVLRGD IVALSNSVCL 960
  961 ACFCANGHIM TFSLPSLRPL LDVYYLPLTN MRIARTFCFA NSGQALYLVS PTEIQRLTYS1020
 1021 QETCENLQEM LGELFTPVET PEAPNRGFFK GLFGGGAQSL DREELFGESS SGKASRSLAQ1080
 1081 HIPGPGGIEG VKGAASGVVG ELARARLALD ERGQKLSDLE ERTAAMMSSA DSFSKHAHEM1140
 1141 MLKYKDKKWY QF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle