YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CLCC1_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCSLLLCGC LLLITGYAHD DDWIDPTDML NYDAASGTMR KSQAKYGTSE KKEVNPGLSD  60
   61 AQELSDCLQR LDSLTHKVDD CEKKKMKDYE SQSNPVFRRY LNKILIEAGK LGLPDEDRVD 120
  121 VRYDAEILLT RQTLLEIQKF LSGEEWKPGA LDDALSDILT NFKSHDAEAW KWQFEDYFGV 180
  181 DPYNVFMVLL CLLCIVALVA TELWTYVRWH TQLKRVCIIS FLVSLGWNWI YLYKVAFAQH 240
  241 QANVAKMAPL NDVCAKKMDW TENLWEWFRI SWTYKDDPCQ KYYELLIVNP IWLVPPTKAL 300
  301 AVTFTNFVTE PLKYIGKGTG EFIKALMKEI PVLLQIPVLV ILALAVLGFC YGAGQSVPML 360
  361 RHFRGPEREP PRALEPDDRR RQKELDYRFH GGAGDADFSY RGPAGSIEQG PYDKMHVCER 420
  421 DVLRQRQVNM RFPSGNKSPE VLRAFDLPDT EAQEHPEVVP SHKPSIVNTS LKETSELPRE 480
  481 STLAECSQCA KDGSGQVPST AESSPIVEKA QLKTDSECRP HSTEAAAAAA RGTDPVSSPC 540
  541 G

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle