YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22671322, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	87	0.84
Transmembrane Helix	88	111	0.85
Non-Cytoplasmic	112	124	0.79
Transmembrane Helix	125	147	0.88
Cytoplasmic	148	154	0.72
Transmembrane Helix	155	174	0.96
Non-Cytoplasmic	175	212	0.80
Transmembrane Helix	213	234	0.87
Cytoplasmic	235	246	0.71
Transmembrane Helix	247	267	0.90
Non-Cytoplasmic	268	300	0.83
Transmembrane Helix	301	323	0.90
Cytoplasmic	324	353	0.81
Transmembrane Helix	354	374	0.52
Non-Cytoplasmic	375	402	0.71
Transmembrane Helix	403	427	0.85
Cytoplasmic	428	437	0.81
Transmembrane Helix	438	458	0.89
Non-Cytoplasmic	459	564	0.78
Transmembrane Helix	565	587	0.88
Cytoplasmic	588	646	0.66
Transmembrane Helix	647	670	0.72
Non-Cytoplasmic	671	701	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQVQNKKPD AKKDDKHNQE TEGLKKIDTY LRTIPTVTKK FKGRPQKKRS PTSAELLLDP  60
   61 KYSASKEGPF GLGPLVFPCL QRFNNIDCFM IFFIASVLIH GALFALADMI LNLYHSLLTL 120
  121 SKRELYFMDF SGYIVSSLVA IFVAHFGGKG NRTKWIAAAC ILMAFGSILL GFPFSKYEIM 180
  181 KSGGQRVELC VEENKRRNIH CVTNSNPDRT KCICFFIIGQ CLNGIAGMPI YILGKTFILD 240
  241 HVPTRSAGFY LALGHSAHLM GYFLGIFGGM KNLSPPPKEK LSAVDSAKIH LLLQFGWWKT 300
  301 FLFVAAISFS VFLVLLCFPT SLPGAHKLKL AKRKEPPTFD KRLKDQKIQP RFKGFVFAIW 360
  361 YMLRNPLLMT QAMCKVSESF AFHTSLEFLP YHLQTQFSIT PQIASMLTGL FVIPGGVIGH 420
  421 FLGGLIVDRL EMTNKNKLKF SLVTSVVSVA LFLLIFFVEC ETTKFAGINE DYDGLGKLGN 480
  481 LTAGCNYHCA CTTSLYSSVC GRDEKEYFSP CFAGCSATKV QQNEKTYYNC SCIKEGLTTS 540
  541 DADGHFIDAT DGTCNSNCLT LPLFFAFYFS ATVFSTMCST PIILIILQSV PANFSSLGQG 600
  601 VTVAITKFTA SVPEPALFGT ASSVACKFWD INACGVREKC WIYNKTTLVY VFIGIWVSFK 660
  661 LFTALLNIYA IHIYDYVVKG KISDSKTTHV KASKAQKERR A